PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G061100.1
Common NamePHAVU_004G061100g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 275aa    MW: 31450.6 Da    PI: 4.5332
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G061100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.81.6e-09951143
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        k i+n+  r++tf +R+ g++KK +E    C+ e ++i+f  +
  Phvul.004G061100.1  9 KHISNEEFRKTTFLRRKRGLMKKISEFFKKCGGEHCLIVFDDD 51
                        689************************************9766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.348152IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-5161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-13288IPR002100Transcription factor, MADS-box
PfamPF003191.2E-101152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRARITLKH ISNEEFRKTT FLRRKRGLMK KISEFFKKCG GEHCLIVFDD DNGDVGPMTS  60
PQNPVEYYES QIKNERPHKT YGIEEFLENR KNMIEAEISR VDKHISSIKY PTWDPSMIMM  120
EEDQLTVFCA HVDAKIEACD QGIKLLKDNA QGFVPNMVME NTTATTSHSN QVNYLQNISQ  180
SEVLLDDFSC LIDVPLNSTN ELNDLEFKEL IMGLSSCDWP YQACDDLVGC SSKVDEFVLP  240
SICVEYQGGE DLHVLSPSLD VFQTNYYNMF FFNI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151605.10.0hypothetical protein PHAVU_004G061100g
TrEMBLV7C0C60.0V7C0C6_PHAVU; Uncharacterized protein
STRINGGLYMA13G07720.12e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-12M-type_MADS family protein